Last updated: 2025-02-22

Checks: 2 0

Knit directory: DEanalysis/

This reproducible R Markdown analysis was created with workflowr (version 1.7.1). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

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Repository version: 7647ea7

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The results in this page were generated with repository version 7647ea7. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

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Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    data/.Rhistory

Untracked files:
    Untracked:  .DS_Store
    Untracked:  .gitignore
    Untracked:  analysis/analysis_humanspine.Rmd
    Untracked:  data/.DS_Store
    Untracked:  data/10X_inputdata.RData
    Untracked:  data/10Xdata_annotate.rds
    Untracked:  data/Bcells.Rmd
    Untracked:  data/Bcellsce.rds
    Untracked:  data/Kang_DEresult.RData
    Untracked:  data/Kang_data.RData
    Untracked:  data/fallopian_DEresult.RData
    Untracked:  data/fallopian_tubes.RData
    Untracked:  data/fallopian_tubes_all.RData
    Untracked:  data/human/
    Untracked:  data/human_spine.RData
    Untracked:  data/human_spine_DEresult.RData
    Untracked:  data/ls_offset_Result.RData
    Untracked:  data/mouse/
    Untracked:  data/permutation.RData
    Untracked:  data/permutation13.RData
    Untracked:  data/permutation2.RData
    Untracked:  data/splatter_simulation.RData
    Untracked:  figure/

Unstaged changes:
    Modified:   analysis/FD_analysis.Rmd
    Modified:   analysis/Kang_overview.Rmd
    Modified:   analysis/analysis on Kang.Rmd
    Modified:   analysis/fallopian_tubes_overview.Rmd
    Modified:   analysis/group8_17-2_19.Rmd
    Modified:   analysis/index.Rmd
    Modified:   analysis/preprocess_human_spine.Rmd
    Modified:   code/DE_methods.R

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These are the previous versions of the repository in which changes were made to the R Markdown (analysis/license.Rmd) and HTML (docs/license.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
html 7647ea7 C-HW 2025-02-22 Build site.
Rmd 0a1d040 C-HW 2025-02-22 analysis/index.Rmd
Rmd 703eb54 C-HW 2023-05-09 create workflowr
html 703eb54 C-HW 2023-05-09 create workflowr

BSD 3-Clause License

Copyright (c) 2023, Chih-Hsuan Wu

Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:

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  2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.

  3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.

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